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2014

Journal Articles

C Buhnemann, S Li, H Yu, H Branford White, KL Schafer, A Llombart-Bosch, I Machado, P Picci, PCW Hogendoorn, NA Athanasou, JA Noble, A. B Hassan
Quantification of the Heterogeneity of Prognostic Cellular Biomarkers in Ewing Sarcoma Using Automated Image and Random Survival Forest Analysis

PLOS ONE 9(9), September 2014.

AT Papageorghiou, EO Ohuma, DG Altman, T Todros, L Cheikh Ismail, A Lambert, YA Jaffer, E Bertino, MG Gravett, M Purwar, JA Noble, R Pang, CG Victora, FC Barros, M Carvalho, LJ Salomon, ZA Bhutta, SH Kennedy, J Villar, for the International Fetal and Newborn Growth Consortium for the 21st Century
International standards for fetal growth based on serial ultrasound measurements: the Fetal Growth Longitudinal Study of the INTERGROWTH-21st Project

(INTERGROWTH-21st)
Lancet 384:869-79, 2014.

J Villar, L Cheikh Ismail, CG Victora, EO Ohuma, E Bertino, DG Altman, A Lambert, AT Papageorghiou, M Carvalho, YA Jaffer, MG Gravett, M Purwar, IO Frederick, AJ Noble, R Pang, FC Barros, C Chumlea,  ZA Bhutta,  SH Kennedy, for the International Fetal and Newborn Growth Consortium for the 21st Century (INTERGROWTH-21st)
International standards for newborn weight, length, and  head circumference by gestational age and sex: the Newborn Cross-Sectional Study of the INTERGROWTH-21st Project

Lancet 384: 857-68, 2014.

AT Papageorghiou, SH Kennedy, LJ Salomon, EO Ohuma, L Cheikh Ismail, FC Barros, A Lambert, M Carvalho, YA Jaffer, E Bertino, MG Gravett, DG Altman, m Purwar, JA Noble, R Pang, CG Victora, ZA Bhutta J Villar
International standards for early fetal size and pregnancy dating based on ultrasound measurement of crown–rump length in the first trimester of pregnancy

Ultrasound in Obstetrics and Gynaecology 2014.
DOI: 10.1002/uog.13448

A Foi, M Maggioni, A Pepe; S Rueda; J A Noble; A T Papageorghiou; J Tohka
Difference of Gaussians Revolved Along Elliptical Paths for Ultrasound Fetal Head Segmentation Computerized Medical Imaging and Graphics (online 30 September 2014)

http://dx.doi.org/10.1016/j.compmedimag.2014.09.006

I Isgum, MJNL Benders, B Avants, MJ Cardoso, SJ Counsell, E Fischi Gomez, L Gui, P Huppi, KJ Kersbergen, A Makropoulos, A Melbourne, P Moeskops, C Mol, M Kuklisova-Murgasova, D Rueckert, JA Schnabel, V Srhoj-Egekher, J Wu, S Wang, LS de Vries, MA Viergever.
Evaluation of automatic neonatal brain segmentation algorithms: the NeoBrainS12 challenge.
Accepted for publication in Medical Image Analysis. 

J Villar, AT Papageorghiou, R Pang, EO Ohuma, LC Ismail, FC Barros, A Lambert, M Carvalho, YA Jaff er, E Bertino, MG Gravett, DG Altman, M Purwar, IO Frederick, JA Noble, CG Victora, ZA Bhutta, SH Kennedy, for the International Fetal and Newborn Growth Consortium for the 21st Century (INTERGROWTH-21st),
The likeness of fetal growth and newborn size across non-isolated populations in the INTERGROWTH-21st Project: The fetal growth longitudinal study and newborn cross-sectional study,
The Lancet Diabetes & Endocrinology,
www.thelancet.com/diabetes-endocrinology Published online July 7, 2014
DOI: http://dx.doi.org/10.1016/S2213-8587(14)70121-4

BW Papiez, MP Heinrich, J Fehrenbach, L Risser, JA. Schnabel.
An implicit sliding-motion preserving regularisation via bilateral filtering for deformable image registration.
Accepted for Special MICCAI 13 Issue of Medical Image Analysis.

Valentina Carapella, Rafel Bordas, Pras Pathmanathan, Maelene Lohezic, Jurgen E Schneider, Peter Kohl, Kevin Burrage, Vicente Grau
Quantitative study of the effect of tissue microstructure on contraction in a computational model of rat left ventricle
2014/4/2 - Volume 9(4) p92792

J Jiao, GE Searle, AC Tziortzi, CA Salinas, RN Gunn, JA Schnabel.
Spatio-temporal pharmacokinetic model based registration of 4D PET neuroimaging data.
NeuroImage 84 (2014) 225-235

MK Yaqub, MK Javaid, C Cooper, JA Noble.
Investigation of the role of feature selection and weighted voting in Random Forests for 3D volumetric segmentation.
IEEE Transactions on Medical Imaging 33(2):258-270, 2014

A di Battista, JA Noble.
An efficient block matching and spectral shift estimation algorithm with applications to ultrasound elastography.
IEEE Trans UFFC. 61 (3) In press 2014.

 

Book chapters

 

D Rueckert and JA Schnabel.
Registration and segmentation in medical imaging.
In: R Cipolla, S Battiato, GM Farinella (Eds.) Registration and Recognition in Images and Videos. Studies in Computational Intelligence Volume 532, pp 137-156 (2014).
http://dx.doi.org/10.1007/978-3-642-44907-9_7

 

Conference Papers

 

M Yaqub, A Kopuri, S Rueda, P B Sullivan, K McCormick, J. A Noble
A Constrained Regression Forests Solution to 3D Fetal Ultrasound Plane Localization for Longitudinal Analysis of Brain Growth and Maturation
Machine Learning in Medical Imaging, LNCS 8679, pp. 109–116, 2014

AIL Namburete, M Yaqub, B Kemp, AT Papageorghiou, JA Noble.
Predicting fetal neurodevelopmental maturation in ultrasound Images.
Proceedings of the Medical Image Computing and Computer Assisted Intervention
(MICCAI), 14-18 September, 2014, accepted.

MA Maraci, R Napolitano, AT Papageorghiou, JA Noble,
Object classification in an ultrasound video using LP-SIFT features
(MICCAI), Medical Computer Vision, 18 September 2014.

MA Maraci, R Napolitano, AT Papageorghiou, JA Noble,
Searching for structures of interest in an ultrasound video sequence,
(MICCAI) 5th International Workshop on Machine Learning in Medical Imaging, 14-18 September 2014, accepted.

João S. Domingos, Richard V. Stebbing, Paul Leeson, and J. Alison Noble
Structured random forests for myocardium delineation in 3D echocardiography.
(MICCAI) 5th International Workshop on Machine Learning in Medical Imaging, 14-18 September 2014, accepted.

C Arteta, V Lempitsky, JA Noble, A Zisserman,
Interactive object counting.
European Conference on Compute Vision 2014.

B Irving, A Cifor, BW Papiez, J Franklin, EM Anderson, M Brady, JA Schnabel.
Automated colorectal tumour segmentation in DCE-MRI using supervoxel neighbourhood contrast characteristics.
Proc Medical Image Computing and Computer Assisted Intervention (MICCAI) 2014, in press.

MP Heinrich, JA Schnabel, BW Papiez, H Handels.
Multispectral image registration based on local canonical correlation analysis. 
Proc Medical Image Computing and Computer Assisted Intervention (MICCAI) 2014, in press.

L Cattell, JA. Schnabel, J Declerck, C Hutton.
Investigation of single- versus joint-modality PET-MR registration for 18F-florbetapir quantication: Application to Alzheimer's disease.
MICCAI 2014 Workshop: Computational Methods in Molecular Imaging (CMMI), 2014, accepted.

M Enescu, MP Heinrich, E Hill, R Sharma, MA Chappell, JA Schnabel.
An MRF-based discrete optimization framework for joint DCE-MRI motion correction and pharmacokinetic parameter estimation. 
MICCAI 2014 Workshop: BAMBI: Bayesian & graphical Models for Biomedical Imaging, 2014, in press.

E Naydenova, A CiforE Hill, J Franklin, RA Sharma, JA Schnabel.
A semi-automated toolkit for analysis of liver cancer treatment response using perfusion CT.
MICCAI 2014 Workshop on Abdominal Imaging: Computational and Clinical
Applications, 2014, accepted.

João S. Domingos, Richard V. Stebbing, Paul Leeson, and J. Alison Noble

Structured random forests for myocardium delineation in 3D echocardiography.
MICCAI 2014: 5th International Workshop on Machine Learning in Medical Imaging, 14-18 September, 2014, accepted.

João S. Domingos, Richard V. Stebbing, and J. Alison Noble
Endocardial segmentation using structured random forests in 3D echocardiography.
MICCAI 2014: Challenge on Endocardial Three-dimensional Ultrasound Segmentation, 14-18 September, 2014, accepted.

BW Papiez, T Tapmeier, MP Heinrich, RJ Muschel, JA Schnabel.
Motion correction of intravital microscopy of preclinical lung tumour imaging using multichannel structural image descriptor.
6th International Workshop on Biomedical Image Registration (WBIR), Springer LNCS, 2014.

L Cattell, JA Schnabel, J Declerck, C Hutton.

Combined PET-MR brain registration to discriminate between Alzheimer's disease and healthy controls.
6th International Workshop on Biomedical Image Registration (WBIR), Springer LNCS, 2014.

A Hallack, MA Chappell, MJ. Gooding, JA Schnabel.
A new similarity metric for groupwise registration of variable flip angle sequences for improved T10 estimation in DCE-MRI.
6th International Workshop on Biomedical Image Registration (WBIR), Springer LNCS, 2014.

MP Heinrich, BW Papiez, JA Schnabel, H Handels.
Non-Parametric discrete registration with convex optimisation.
6th International Workshop on Biomedical Image Registration (WBIR), Springer LNCS, in press.

Andre Hallack, Michael A. Chappell, E. Mark Anderson, Fergus V. Gleeson, Mark J. Gooding and Julia A. Schnabel
Sources of error in pharmacokinetic analysis of DCE-MRI
ISMRM 14/05/2014


Thomas Nketia, Jens Rittscher, J. Alison Noble
Utilizing phase retardation features for segmenting cells in phase contrast microscopy images
Medical Image Understanding and Analysis 2014

AIL Namburete, RV Stebbing, JA Noble.
Diagnostic plane extraction from 3D parametric surface of the fetal cranium.
Medical Image Understanding and Analysis 2014.

 

Conference Abstracts

 

 

Omar S. Al-Kadi, Daniel YF Chung, Constantin C Coussios and J Alison Noble
Predicting tumour responsiveness to chemotherapy treatment in volumetric Xenograft images
Medical Engineering Centres Annual Meeting and Bioengineering 2014
 
C.L.Knight, M.Ahmed, K.Edwards, V.Donadono, G.Parry, S.Rueda, J.A.Noble, A.T.Papageorghiou
Fetal limb fat and lean tissue assessment using 3D ultrasound and a fractional volume MATLAB tool
Medical Engineering Centres Annual Meeting and Bioengineering 2014

C. L. Knight, M. Ahmed, K. Edwards, V. Donadono, G. Parry, S. Rueda, J. A. Noble, A. T. Papageorghiou
Fetal arm fat: a better marker than thigh fat for nutritional status?
ISUOG 24th World Congress, Barcelona, Spain, September 2014

C. L. Knight, M. Ahmed, K. Edwards, V. Donadono, G. Parry, S. Rueda, J. A. Noble, A. T. Papageorghiou
Fetal limb fat and lean volume reference ranges from an optimally healthy population
ISUOG 24th World Congress, Barcelona, Spain, September 2014

M. Ahmed, C. L. Knight, A. T. Papageorghiou, J. A. Noble
Eye tracking as a tool to assess sonographer behaviour when quality-scoring fetal ultrasound images
ISUOG 24th World Congress, Barcelona, Spain, September 2014

C. L. Knight, M. Ahmed, K. Edwards, V. Donadono, G. Parry, S. Rueda,J. A. Noble, A. T. Papageorghiou
Fetal Fat Index (FFI): Reference ranges for fetal thigh fat
3rd International Conference on Fetal Growth, Oxford, UK, October 2014

C. Knight, S. Rueda, M. Ahmed, K. Edwards, J. Noble, A. Papageorghiou
Fetal Fat Index (FFI) reference ranges: A simple method to assess limb fat
XXIV European Congress of Perinatal Medicine, Florence, Italy, July 2014

Bryn Kemp, Ana Namburete, Stephen Kennedy, Alison Noble and Aris Papageorghiou
A regression forest-based automated image analysis technique to estimate GA between 18 and 34 weeks using a single 3D brain volume dataset – a prospective validation
ISUOG 2014, Barcelona, Spain, accepted.
 
O. S. Al-Kadi
 A Multiresolution Clinical Decision Support System Based on Fractal Model Design for Classification of Histological Brain Tumours.
Computerized Medical Imaging and Graphics, 2014. (in press)

MA Maraci, R Napolitano, AT Papageorghiou, JA Noble,
Searching for structures of interest in an ultrasound video sequence with an application for detection of breech.
ISUOG 2014.

C. Knight, S. Rueda , M. Ahmed ,K. Edwards, J. Noble, A. Papageorghiou,
Fetal Fat Index (FFI) reference ranges: a simple method to assess limb fat, European Congress on perinatal medicine 
Florence 2014. (Oral Presentation)

Kopuri, A,  Yaqub, M, Rueda, S, Sullivan, P,  McCormick, K, Noble, J A,
Cranial ultrasound derived ‘Thalamic Area’ as a marker for brain growth in premature
infants and comparison with similar markers from a normal fetal population
PAS 2014.

JS. Domingos, DX. Augustine, P. Leeson, JA. Noble
A fully automated method for apical diagnostic view finding in 3D echocardiography
EuroEcho-Imaging 2014. Accepted.

JS. Domingos, H. Boardman, P. Leeson, JA. Noble
A new automated myocardial boundary delineator: comparison of left ventricular volume by 3D echocardiography and cardiovascular magnetic resonance.
EuroEcho-Imaging 2014. Accepted.

J Franklin, B Irving, M Betts,  A Hallack, M Brady, JA Schnabel, EM Andersson, FV Gleeson.
Impact of interobserver variability on dceMRI-derived pharmacokinetic parameters in patients with locally advanced rectal cancer.
Proc. RSNA, 2014. Accepted.

M Enescu, A Cifor, V Kersemans, D Allen, S Smart, J Schnabel, M Chappell.

Pharmacokinetic modelling of longitudinal DCE-MRI scans for assessment of tumour growth.
Joint Annual Meeting ISMRM-ESMRMB 2014. 

A Hallack, MA Chappell, EM Anderson, FV Gleeson, MJ Gooding, JA Schnabel.
Sources of errors in pharmacokinetic analysis of DCE-MRI.
Joint Annual Meeting ISMRM-ESMRMB 2014. 

EJ Hill, M Enescu, N West, JM Franklin, K-Y Chu, J Li, D Whittington, TP Macgregor, SAshraf, C Blesing, S Mukherjee, M Betts, A Slater, EM Anderson, G Brown, JA Schnabel, M Partridge, P Quirke, and RA Sharma.
Oral nelfinavir before and during radiation therapy for rectal cancer: Changes in tumor perfusion and correlation between tissue and radiological markers of response.
2014 Gastrointestinal Cancers Symposium.