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2017

Journal Articles

Y Hu, M Modat, E Gibson, N Ghavami, E Bonmati, CM Moore, M Emberton, JA Noble, DC Barratt, TVercauteren. Label-driven weakly-supervised learning for multimodal deformable image registration arXiv preprint arXiv:1711.01666. 2017.

DM Vigneault, W Xie, CY Ho, DA Bluemke, JANoble. Fully Automatic, Multi-View Cardiac MR Detection, Orientation, and Segmentation with Deep Neural Networks arXiv preprint arXiv:1711.01094. 2017.

Avan Suinesiaputra, Pierre Ablin, Xenia Alba, Martino Alessandrini, Jack Allen, Wenjia Bai, Serkan Cimen, Peter Claes, Brett R Cowan, Jan D'hooge, Nicolas Duchateau, Jan Ehrhardt, Alejandro F Frangi, Ali Gooya, Vicente Grau, Karim Lekadir, Allen Lu, Anirban Mukhopadhyay, Ilkay Oksuz, Nripesh Parajali, Xavier Pennec, Marco Pereanez, Catarina Pinto, Paolo Piras, Marc-Michel Rohe, Daniel Rueckert, Dennis Saring, Maxime Sermesant, Kaleem Siddiqi, Mahdi Tabassian, Luciano Teresi, Sotirios A Tsaftaris, Matthias Wilms, Alistair A Young, Xingyu Zhang, Pau Medrano-Gracia Statistical shape modeling of the left ventricle: myocardial infarct classification challenge IEEE journal of biomedical and health informatics. 2017.

Ramón Casero, Urszula Siedlecka, Elizabeth S Jones, Lena Gruscheski, Matthew Gibb, Jürgen E Schneider, Peter Kohl, Vicente Grau Transformation diffusion reconstruction of three-dimensional histology volumes from two-dimensional image stacks Medical image analysis (38), 184-204. 2017.

Joanne Bates, Irvin Teh, Darryl McClymont, Peter Kohl, Jürgen E Schneider, Vicente Grau Monte Carlo Simulations of Diffusion Weighted MRI in Myocardium: Validation and Sensitivity Analysis IEEE Transactions on Medical Imaging (36(6)), 1316-1325. 2017.

Russell Bates, Benjamin Irving, Bostjan Markelc, Jakob Kaeppler, Ruth Muschel, Vicente Grau, Julia A Schnabel Extracting 3D Vascular Structures from Microscopy Images using Convolutional Recurrent Networks arXiv preprint arXiv:1705.09597. 2017.

KS Burrowes, Tom Doel, M Kim, Claudia Vargas, Josep Roca, Vicente Grau, D Kay A combined image-modelling approach assessing the impact of hyperinflation due to emphysema on regional ventilation–perfusion matching Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization (5(2)), 110-126. 2017.

Vicente Grau Correction of Slice Misalignment in Multi-breath-hold Cardiac MRI Scans Statistical Atlases and Computational Models of the Heart. Imaging and Modelling Challenges: 7th International Workshop, STACOM 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Revised Selected Papers (10124), 30. 2017.

Sean Coffey, Adam J Lewandowski, Steve Garratt, Rudy Meijer, Steven Lynum, Ram Bedi, James Paterson, Mohammad Yaqub, J Alison Noble, Stefan Neubauer, Steffen E Petersen, Naomi Allen, Cathie Sudlow, Rory Collins, Paul M Matthews, Paul Leeson Protocol and quality assurance for carotid imaging in 100,000 participants of UK Biobank: development and assessment European journal of preventive cardiology (24(17)), 1799-1806. 2017.

MAli Maraci, CP Bridge, R Napolitano, A Papageorghiou, JA Noble. A framework for analysis of linear ultrasound videos to detect fetal presentation and heartbeat Medical image analysis (37), 22-36. 2017.

M Yaqub, B Kelly, A Papageorghiou, J A Noble. A Deep Learning Solution for Automatic Fetal Neurosonographic Diagnostic Plane Verification Using Clinical Standard Constraints Ultrasound in Medicine and Biology 2017, 10.1016/j.ultrasmedbio.2017.07.013

Angelo Cavallaro, Stephen T Ash, Raffaele Napolitano, Sikolia Wanyonyi, Eric O Ohuma, Malid Molloholli, Joyce Sande, Ippokratis Sarris, Christos Ioannou, Tess Norris, Vera Donadono, Maria Carvalho, Manorama Purwar, Fernando C Barros, Yasmin A Jaffer, Enrico Bertino, Ruyan Pang, Michael G Gravett, Laurent J Salomon, Julia Alison Noble, Douglas G Altman, Aris T Papageorghiou Quality control of ultrasound for fetal biometry: results from the INTERGROWTH‐21st Project Ultrasound in Obstetrics & Gynecology. 2017.

I Salim, E Staines‐Urias, J Villar, DG Altman, JA Noble, E Bertino, MG Gravett, M Purwar, R Pang, FC Barros, RW Stones, YA Jaffer, S Kennedy, AT Papageorghiou P20. 09: The probability of cephalic presentation across pregnancy in the INTERGROWTH‐21st fetal growth longitudinal study Ultrasound in Obstetrics & Gynecology (50(S1)), 220-221. 2017.

V Donadono, R Napolitano, EO Ohuma, M Molloholli, SZ Wanyonyi, B Kemp, A Cavallaro, M Yaqub, ST Ash, YA Jaffer, DG Altman, JA Noble, E Bertino, MG Gravett, M Purwar, R Pang, FC Barros, M Carvalho, J Villar, S Kennedy, AT Papageorghiou OC06. 01: Development of normal fetal brain structures: international standards based on ultrasound measurements from the INTERGROWTH‐21st Project Ultrasound in Obstetrics & Gynecology (50(S1)), 10-11. 2017.

SL Collins, AW Welsh, L Impey, JA Noble, GN Stevenson. 3D fractional moving blood volume (3D-FMBV) demonstrates decreased first trimester placental vascularity in pre-eclampsia but not the term, small for gestation age baby PloS one (12(6)), e0178675. 2017.

 

A Cavallaro, ST Ash, R Napolitano, S Wanyonyi, EO Ohuma, M Molloholli, J Sande, I Sarris, C Ioannou, T Norris, V Donadono, M Carvalho, M Purwar, FC Barros, YA Jaffer, E Bertino, R Pang, MG Gravett, LJ Salomon, JA Noble, DG Altman, AT Papageorghiou. Quality control of ultrasound for fetal biometry: results from the INTERGROWTH-21 (st) Project Ultrasound in obstetrics & gynecology: the official journal of the International Society of Ultrasound in Obstetrics and Gynecology. 2017.

W Huang, CP Bridge, JA Noble, A Zisserman. Temporal HeartNet: Towards Human-Level Automatic Analysis of Fetal Cardiac Screening Video arXiv preprint arXiv:1707.00665. 2017.

Y Hu, E Gibson, LL Lee, W Xie, DC Barratt, T Vercauteren, JA Noble. Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks arXiv preprint arXiv:1707.05392. 2017.

NP Blockley, JW Harkin, DP Bulte. Rapid cerebrovascular reactivity mapping: Enabling vascular reactivity information to be routinely acquired bioRxiv, 94359. 2017.

Nicolas Basty, Darryl McClymont, Irvin Teh, Jürgen E Schneider, Vicente Grau Reconstruction of 3D Cardiac MR Images from 2D Slices Using Directional Total Variation Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 127-135. 2017.

Adam Szmul, Bartłomiej W Papież, Andre Hallack, Vicente Grau, Julia A Schnabel Supervoxels for graph cuts-based deformable image registration using guided image filtering Journal of electronic imaging (26(6)), 061607. 2017.

J Villar, FA Puglia, TR Fenton, LC Ismail, E Staines-Urias, F Giuliani, EO Ohuma, CG Victora, P Sullivan, FC Barros, A Lambert, AT Papageorghiou, R Ochieng, YA Jaffer, D Altman, JA Noble, MG Gravett, M Purwar, R Pang, R Uauy, SH Kennedy, ZA Bhutta. Body composition at birth and its relationship with neonatal anthropometric ratios: the Newborn Body Composition Study of the INTERGROWTH-21st Project. 2017.

R Jia, P Monk, D Murray, JA Noble, S Mellon. CAT & MAUS: A novel system for true dynamic motion measurement of underlying bony structures with compensation for soft tissue movement Journal of Biomechanics. 2017.

KA Wartolowska, DP Bulte, MA Chappell, M Jenkinson, TW Okell, M Webster, AJ Carr. Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain 

SZ Wanyonyi, CM Mariara, S Vinayak, W Stones, H Ostensen, S Sippel, K Muruganandan, A Levine, S Shah, L de Bernis, M Kinney, W Stones, P ten Hoope-Bender, D Vivio, S Leisher, Z Bhutta, M Gülmezoglu, M Mathai, J Belizán, L Franco, L McDougall, J Zeitlin, A Malata, K Dickson, J Lawn, LD Aliyu, A Kurjak, T Wataganara, RA Moreira de Sa, R Pooh, C Sen, A Ebrashy, A Ara, M Stanojevic, CO Bagayoko, D Traore, L Thevoz, S Diabate, D Pecoul, M Niang, G Bediang, ST Traore, A Anne, A Geissbuhler, M Fieschi, EM McClure, RO Nathan, S Saleem, F Esamai, A Garces, E Chomba, A Tshefu, D Swanson, H Mabeya, L Figuero, W Mirza, D Muyodi, H Franklin, A Lokangaka, D Bidashimwa, O Pasha, M Mwenechanya, CL Bose, WA Carlo, KM Hamidge, EA Leichty, N Krebs, DD Wallace, J Swanson, M Koso-Thomas, R Widmer, RL Goldenberg, LJ Salomon, Z Alfirevic, V Berghella, C Bilardo, E Hernandez-Andrade, SL Johnsen, K Kalache, KY Leung, G Malinger, H Munoz, F Prefumo, A Toi, W Lee, D Marinac-Dabic, CJ Krulewitch, RM Moore, T Gammeltoft, H Thi, T Nguyen, S Greenhalgh, FIGO Safe Motherhood, White Ribbon Alliance ICM, P Jha, MA Kesler, F Ram, U Ram, L Aleksandrowicz, DG Bassani, S Chandra, JK Banthia, C Junking, R Pawson, T Greenhalgh, G Harvey, K Walshe, G Wong, G Westhorp, BG Ewigman, JP Crane, FD Frogoletto, ML LeFevre, RP Bain, D McNellis, L Geerts, EJ Brand, G Theron, B Van Dyke, JA Motto, EJ Buchmann, GJ Hofmeyr, JS Carvalho, E Mavrides, EA Shinebourne, S Campbell, B Thaliganathan, L Maggio, JD Dahlke, H Mendez-Figueroa, CM Albright, SP Chauhan, KD Wenstrom, A Spinillo, L Montanari, C Bergante, G Gaia, A Chiara, E Fazzi, RA Haws, MY Yakoob, T Soomro, EV Menezes, GL Darmstadt, ZA Bhutta, CM Bann, HP Robinson, KA Bennett, JM G Crane, P O’Shea. Opportunities and Challenges in Realizing Universal Access to Obstetric Ultrasound in Sub-Saharan Africa Ultrasound International Open (3(2)), E52-E59. 2017.

CP Bridge, C Ioannou, JA Noble. Automated annotation and quantitative description of ultrasound videos of the fetal heart Medical Image Analysis (36) 147-161. 2017.

George WJ Harston, Thomas W Okell, Fintan Sheerin, Ursula Schulz, Phil Mathieson, Ian Reckless, Kunal Shah, Gary A Ford, Michael A Chappell, Peter Jezzard, James Kennedy Quantification of Serial Cerebral Blood Flow in Acute Stroke Using Arterial Spin Labeling Stroke (48(1)), 123-130. 2017.

GWJ Harston, D Minks, F Sheerin, SJ Payne, M Chappell, P Jezzard, M Jenkinson, J Kennedy. Optimizing image registration and infarct definition in stroke research Annals of clinical and translational neurology (4(3)), 166-174. 2017.

JF Kallehauge, S Sourbron, B Irving, K Tanderup, JA Schnabel, MA Chappell. Comparison of linear and nonlinear implementation of the compartmental tissue uptake model for dynamic contrast‐enhanced MRI Magnetic resonance in medicine (77(6)), 2414-2423. 2017.

Z Shirzadi, B Stefanovic, MA Chappell, J Ramirez, G Schwindt, M Masellis, SE Black, BJ MacIntosh. Enhancement of automated blood flow estimates (ENABLE) from arterial spin‐labeled MRI Journal of Magnetic Resonance Imaging. 2017.

M Garcia, TW Okell, M Gloor, MA Chappell, P Jezzard, O Bieri, JV Byrne. Feasibility of Flat Panel Detector CT in Perfusion Assessment of Brain Arteriovenous Malformations: Initial Clinical Experience American Journal of Neuroradiology (38(4)), 735-739. 2017.

M Castellaro, G Rizzo, M Tonietto, M Veronese, FE Turkheimer, MA Chappell, A Bertoldo A Variational Bayesian inference method for parametric imaging of PET data Neuroimage (150), 136-149. 2017.

GWJ Harston, TW Okell, F Sheerin, U Schulz, P Mathieson, I Reckless, K Shah, GA Ford, MA Chappell, P Jezzard, J Kennedy. Quantification of Serial Cerebral Blood Flow in Acute Stroke Using Arterial Spin Labeling Stroke (48(1)), 123-130. 2017.

N Hartkamp, E Petersen, M Chappell, T Okell, M Uyttenboogaart, C Zeebregts, R Bokkers. Relationship between collateral blood flow and hemodynamic impairment in carotid artery disease Oxford University Research Archive. 2017.

 S Coffey, AJ Lewandowski, S Garratt, R Meijer, S Lynum, R Bedi, J Paterson, M Yaqub, JA Noble, S Neubauer, S E Petersen, N Allen, C Sudlow, R Collins, PM Matthews, P Leeson. Protocol and quality assurance for carotid imaging in 100,000 participants of UK Biobank: development and assessment European Journal of Preventive Cardiology (24(17)), 1799-1806. 2017.

Moss Y Zhao, Melvin Mezue, Andrew R Segerdahl, Thomas W Okell, Irene Tracey, Yingyi Xiao, Michael A Chappell A systematic study of the sensitivity of partial volume correction methods for the quantification of perfusion from pseudo-continuous arterial spin labeling MRI NeuroImage (162), 384-397. 2017.

Helen Winter, Jolanta Mirecka, Bartek Papiez, Ben Irving, Mark Jenkinson, Michael Chappell, Ricky A Sharma, Julia Schnabel Clinical feasibility of texture analysis in DCE MRI of patients receiving selective internal radiation therapy European Journal of Surgical Oncology (43(11)), 2228. 2017.

Michael Chappell, Bradley MacIntosh, Thomas Okell Perfusion Quantification Using Arterial Spin Labelling Oxford University Press. 2017.

Mark Jenkinson, Michael Chappell Introduction to Neuroimaging Analysis Oxford University Press. 2017.

Graeme A Keith, Christopher T Rodgers, Michael A Chappell, Matthew D Robson A look‐locker acquisition scheme for quantitative myocardial perfusion imaging with FAIR arterial spin labeling in humans at 3 tesla Magnetic resonance in medicine (78(2)), 541-549. 2017.

Zahra Shirzadi, Bojana Stefanovic, Michael A Chappell, Joel Ramirez, Graeme Schwindt, Mario Masellis, Sandra E Black, Bradley J MacIntosh Enhancement of automated blood flow estimates (ENABLE) from arterial spin‐labeled MRI Journal of Magnetic Resonance Imaging. 2017.

Jesper F Kallehauge, Steven Sourbron, Benjamin Irving, Kari Tanderup, Julia A Schnabel, Michael A Chappell Comparison of linear and nonlinear implementation of the compartmental tissue uptake model for dynamic contrast‐enhanced MRI Magnetic resonance in medicine (77(6)), 2414-2423. 2017.

G Ralli, DR McGowan, MA Chappell, RA Sharma, GS Higgins, JD Fenwick  4D-PET reconstruction of dynamic non-small cell lung cancer [18-F]-FMISO-PET data using adaptive-knot cubic b-splines 2017.

M Castellaro, G Rizzo, M Tonietto, M Veronese, FE Turkheimer, MA Chappell, A Bertoldo  A Variational Bayesian inference method for parametric imaging of PET data Neuroimage (150), 136-149. 2017.

M Garcia, TW Okell, M Gloor, MA Chappell, P Jezzard, O Bieri, JV Byrne Feasibility of Flat Panel Detector CT in Perfusion Assessment of Brain Arteriovenous Malformations: Initial Clinical Experience American Journal of Neuroradiology (38(4)), 735-739. 2017.

Yipeng Hu, Eli Gibson, Li-Lin Lee, Weidi Xie, Dean C Barratt, Tom Vercauteren, J Alison Noble Freehand Ultrasound Image Simulation with Spatially-Conditioned Generative Adversarial Networks Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment, 105-115. 2017.

Arijit Patra, Weilin Huang, J Alison Noble Learning Spatio-Temporal Aggregation for Fetal Heart Analysis in Ultrasound Video Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support, 276-284. 2017.

Ana IL Namburete, Weidi Xie, J Alison Noble Robust Regression of Brain Maturation from 3D Fetal Neurosonography Using CRNs Fetal, Infant and Ophthalmic Medical Image Analysis, 73-80. 2017.

George WJ Harston, David Minks, Fintan Sheerin, Stephen J Payne, Michael Chappell, Peter Jezzard, Mark Jenkinson, James Kennedy Optimizing image registration and infarct definition in stroke research Annals of clinical and translational neurology (4(3)), 166-174. 2017.

Ernesto Zacur, Ana Minchole, Benjamin Villard, Valentina Carapella, Rina Ariga, Blanca Rodriguez, Vicente Grau  MRI-Based Heart and Torso Personalization for Computer Modeling and Simulation of Cardiac Electrophysiology Imaging for Patient-Customized Simulations and Systems for Point-of-Care Ultrasound, 61-70. 2017.

Russell Bates, Benjamin Irving, Bostjan Markelc, Jakob Kaeppler, Graham Brown, Ruth J Muschel, Michael Brady, Vicente Grau, Julia A Schnabel Segmentation of Vasculature from Fluorescently Labeled Endothelial Cells in Multi-Photon Microscopy Images IEEE transactions on medical imaging. 2017.

Darryl McClymont, Irvin Teh, Eric Carruth, Jeffrey Omens, Andrew McCulloch, Hannah J Whittington, Peter Kohl, Vicente Grau, Jürgen E Schneider Evaluation of non‐Gaussian diffusion in cardiac MRI Magnetic resonance in medicine (78(3)), 1174-1186. 2017.

Peter Jezzard, Michael A Chappell, Thomas W Okell Arterial spin labeling for the measurement of cerebral perfusion and angiography Journal of Cerebral Blood Flow & Metabolism, 0271678X17743240. 2017.

Alexander Seiler, Nicholas P Blockley, Ralf Deichmann, Ulrike Nöth, Oliver C Singer, Michael A Chappell, Johannes C Klein, Marlies Wagner The relationship between blood flow impairment and oxygen depletion in acute ischemic stroke imaged with magnetic resonance imaging Journal of Cerebral Blood Flow & Metabolism. 2017.

Karolina A Wartolowska, Daniel P Bulte, Michael A Chappell, Mark Jenkinson, Thomas W Okell, Matthew Webster, Andrew J Carr Using Arterial Spin Labelling to Investigate Spontaneous and Evoked Ongoing Musculoskeletal Pain bioRxiv, 163196. 2017.

Nolan S Hartkamp, Esben T Petersen, Michael A Chappell, Thomas W Okell, Maarten Uyttenboogaart, Clark J Zeebregts, Reinoud PH Bokkers Relationship between haemodynamic impairment and collateral blood flow in carotid artery disease Journal of Cerebral Blood Flow & Metabolism. 2017.


Conference Papers

J Alison Noble. Machine learning in medical ultrasound to assist clinical diagnosis. Ultrasonics Symposium (IUS), 2017 IEEE International. 2017.

Weilin Huang, Christopher P Bridge, J Alison Noble, Andrew Zisserman. Temporal HeartNet: towards human-level automatic analysis of fetal cardiac screening video. International Conference on Medical Image Computing and Computer-Assisted Intervention, 341-349. 2017.

Yuan Gao, J Alison Noble. Detection and Characterization of the Fetal Heartbeat in Free-hand Ultrasound Sweeps with Weakly-supervised Two-streams Convolutional Networks. International Conference on Medical Image Computing and Computer-Assisted Intervention, 305-313. 2017.

Yipeng Hu, Eli Gibson, Tom Vercauteren, Hashim U Ahmed, Mark Emberton, Caroline M Moore, J Alison Noble, Dean C Barratt. Intraoperative Organ Motion Models with an Ensemble of Conditional Generative Adversarial Networks. International Conference on Medical Image Computing and Computer-Assisted Intervention, 368-376. 2017.

Christopher P Bridge, Christos Ioannou, J Alison Noble. Localizing Cardiac Structures in Fetal Heart Ultrasound Video. International Workshop on Machine Learning in Medical Imaging, 347-255. 2017.

V Sundaresan, CP Bridge, C Ioannou, JA Noble.  Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium, 671-674. 2017.

Manon Simard, James R Larkin, Kevin J Ray, Alexandre A Khrapitchev, James A Meakin, Peter Jezzard, Michael A Chappell, Nicola R Sibson. ARTERIAL SPIN LABELLING MRI OF CEREBRAL TUMOURS. Nueuro-Oncology (19), 125. 2017.

M Simard, JR Larkin, KJ Ray, AA Khrapitchev, JA Meakin, P Jezzard, MA Chappell, NR Sibson. ARTERIAL SPIN LABELLING MRI OF CEREBRAL TUMOURS NEURO-ONCOLOGY (19), 125. 2017.

GP Ralli, DR McGowan, MA Chappell, RA Sharma, GS Higgins, JD Fenwick. 4D-PET reconstruction of dynamic non-small cell lung cancer [18-F]-FMISO-PET data using adaptive-knot cubic B-splines Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium, 1189-1192. 2017.

MG Bright, EL Mazerolle, O Sobczyk, AP Fan, MJP van Osch, CI Mark, L Huber, AJL Berman, DP Bulte, BG Pike, CJ Gauthier, NP Blockley.  

DM Vigneault, W Xie, DA Bluemke, JA Noble. Feature Tracking Cardiac Magnetic Resonance via Deep Learning and Spline Optimization International Conference on Functional Imaging and Modeling of the Heart, 183-194. 2017.

Huan Qi, Sally Collins, Alison Noble. Weakly Supervised Learning of Placental Ultrasound Images with Residual Networks. Annual Conference on Medical Image Understanding and Analysis, 98-108. 2017.

Vicente Grau Automated LGE Myocardial Scar Segmentation Using MaskSLIC Supervoxels-Replicating the Clinical Method Medical Image Understanding and Analysis: 21st Annual Conference, MIUA 2017, Edinburgh, UK, July 11–13, 2017, Proceedings. 2017.

Benjamin Villard, Valentina Carapella, Rina Ariga, Vicente Grau, Ernesto Zacur. Cardiac mesh reconstruction from sparse, heterogeneous contours. Annual Conference on Medical Image Understanding and Analysis, 169-181. 2017.

Vicente Grau. Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment: Fifth International Workshop, CMMI 2017, Second International Workshop, RAMBO 2017, and First International Workshop, SWITCH 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 14, 2017, Proceedings.

Hoileong Lee, Tahreema Matin, Fergus Gleeson, Vicente Grau. Learning-Based Multi-atlas Segmentation of the Lungs and Lobes in Proton MR Images. International Conference on Medical Image Computing and Computer-Assisted Intervention, 108-115. 2017.